Index A | B | C | E | F | G | L | M | N | P | Q | R | S | T | U | V | W A acylindricity() (in module calc.morphology) animate() (in module render.render) area (visuals.shapes.SuperEllipse property) aspect (visuals.shapes.SuperEllipse property) asphericity() (in module calc.morphology) B box_to_matrix() (in module calc.locality) C c6_clusters() (in module calc.clusters) calc.bond_order module calc.clusters module calc.locality module calc.morphology module calc.orient_order module calc_state() (coloring.base.ColorBase method) (coloring.base.ColorBlender method) (coloring.bondcolor.ColorBondOrder method) (coloring.bondcolor.ColorConn method) (coloring.bondcolor.ColorConnG method) (coloring.bondcolor.ColorPsiG method) (coloring.bondcolor.ColorPsiPhase method) (coloring.bondcolor.ColorQG method) (coloring.defectcolor.ColorC4Defects method) (coloring.defectcolor.ColorC6Defects method) (coloring.defectcolor.ColorS2Defects method) (coloring.morphcolor.ColorCirc method) (coloring.morphcolor.ColorEpsPhase method) (coloring.morphcolor.ColorEta0 method) (coloring.morphcolor.ColorRg method) (coloring.paticcolor.ColorS2 method) (coloring.paticcolor.ColorS2G method) (coloring.paticcolor.ColorS2Phase method) (coloring.paticcolor.ColorT4 method) (coloring.paticcolor.ColorT4G method) central_eta() (in module calc.morphology) circularity() (in module calc.morphology) cluster_averager() (in module calc.clusters) cluster_com() (in module calc.clusters) cluster_gyrate() (in module calc.clusters) cluster_rg() (in module calc.clusters) cluster_shape() (in module calc.clusters) color_blender() (in module coloring.base) color_gradient() (in module coloring.base) ColorBase (class in coloring.base) ColorBlender (class in coloring.base) ColorBondOrder (class in coloring.bondcolor) ColorC4Defects (class in coloring.defectcolor) ColorC6Defects (class in coloring.defectcolor) ColorCirc (class in coloring.morphcolor) ColorConn (class in coloring.bondcolor) ColorConnG (class in coloring.bondcolor) ColorEpsPhase (class in coloring.morphcolor) ColorEta0 (class in coloring.morphcolor) coloring.base module coloring.bondcolor module coloring.defectcolor module coloring.morphcolor module coloring.paticcolor module ColorPsiG (class in coloring.bondcolor) ColorPsiPhase (class in coloring.bondcolor) ColorQG (class in coloring.bondcolor) ColorRg (class in coloring.morphcolor) ColorS2 (class in coloring.paticcolor) ColorS2Defects (class in coloring.defectcolor) ColorS2G (class in coloring.paticcolor) ColorS2Phase (class in coloring.paticcolor) ColorT4 (class in coloring.paticcolor) ColorT4G (class in coloring.paticcolor) contour_PEL() (in module visuals.fields) create_from_gsd() (visuals.fields.Field class method) crystal_connectivity() (in module calc.bond_order) E electrode_gap (visuals.fields.Field property) ellipticity() (in module calc.morphology) expand_around_pbc() (in module calc.locality) extxyz() (coloring.base.ColorBase method) F Field (class in visuals.fields) flat_bond_order() (in module calc.bond_order) flat_patches() (in module visuals.shapes) G global_bond_order() (in module calc.bond_order) global_patic() (in module calc.orient_order) gyration_radius() (in module calc.morphology) gyration_tensor() (in module calc.morphology) L local_colors() (coloring.base.ColorBase method) (coloring.base.ColorBlender method) (coloring.defectcolor.ColorC4Defects method) (coloring.defectcolor.ColorC6Defects method) (coloring.defectcolor.ColorS2Defects method) local_patic() (in module calc.orient_order) local_vectors() (in module calc.locality) M matrix_to_box() (in module calc.locality) mcolor() (in module coloring.base) module calc.bond_order calc.clusters calc.locality calc.morphology calc.orient_order coloring.base coloring.bondcolor coloring.defectcolor coloring.morphcolor coloring.paticcolor render.render visuals.fields visuals.shapes N neighbors() (in module calc.locality) num_fields (visuals.fields.Field property) num_pts (coloring.base.ColorBase property) P padded_neighbors() (in module calc.locality) PEL_arrows() (in module visuals.fields) plot_principal_axes() (in module visuals.shapes) projected_bond_order() (in module calc.bond_order) projected_patches() (in module visuals.shapes) Q quat_to_angle() (in module calc.locality) R render.render module render_3d() (in module render.render) render_npole() (in module render.render) render_sphere() (in module render.render) render_surf() (in module render.render) S shape (coloring.base.ColorBase property) shape_anisotropy() (in module calc.morphology) snap (coloring.base.ColorBase property) spectral_PEL() (in module visuals.fields) state_string() (coloring.base.ColorBase method) (coloring.base.ColorBlender method) (coloring.bondcolor.ColorBondOrder method) (coloring.bondcolor.ColorConn method) (coloring.bondcolor.ColorPsiG method) (coloring.bondcolor.ColorPsiPhase method) (coloring.bondcolor.ColorQG method) (coloring.defectcolor.ColorC4Defects method) (coloring.defectcolor.ColorC6Defects method) (coloring.defectcolor.ColorS2Defects method) (coloring.morphcolor.ColorCirc method) (coloring.morphcolor.ColorEpsPhase method) (coloring.morphcolor.ColorEta0 method) (coloring.morphcolor.ColorRg method) (coloring.paticcolor.ColorS2 method) (coloring.paticcolor.ColorS2G method) (coloring.paticcolor.ColorT4 method) (coloring.paticcolor.ColorT4G method) steinhardt_bond_order() (in module calc.bond_order) stretched_bond_order() (in module calc.bond_order) stretched_neighbors() (in module calc.locality) SuperEllipse (class in visuals.shapes) surface() (visuals.shapes.SuperEllipse method) surface_normal (coloring.bondcolor.ColorBondOrder property) T tangent_connection() (in module calc.locality) U U_rot() (visuals.fields.Field method) U_trans() (visuals.fields.Field method) update_from_gsd() (visuals.fields.Field method) V visuals.fields module visuals.shapes module W weighted_chi_graph() (in module calc.bond_order)